TY - BOOK AU - Wang,Junbai AU - Tan,Aik Choon AU - Tian,Tianhai TI - Next generation microarray bioinformatics : methods and protocols T2 - Methods in molecular biology SN - 9781617793998 U1 - 572.8636 PY - 2012/// CY - New York PB - Humana Press, Springer KW - DNA microarrays KW - Bioinformatics KW - Computational Biology KW - Microarray Analysis N1 - A primer on the current state of microarray technologies -- The KEGG databases and tools facilitating omics analysis: Latest developments involving human diseases and pharmaceuticals -- Strategies to explore functional genomics data sets in NCBI's GEO database -- Analyzing cancer samples with SNP arrays -- Classification approaches for microarray gene expression data analysis -- Biclustering of time series microarray data -- Using the bioconductor geneanswers package to interpret gene lists -- Analysis of isoform expression from splicing array using multiple comparisons -- Functional comparison of microarray data across multiple platforms using the method of percentage of overlapping functions -- Performance comparison of multiple microarray platforms for gene expression profiling -- Integrative approaches for microarray data analysis -- Modeling gene regulation networks using ordinary differential equations -- Nonhomogeneous dynamic bayesian networks in systems biology -- Inference of regulatory networks from microarray data with R and the bioconductor package qpgraph -- Effective non-linear methods for inferring genetic regulation from time-series microarray gene expression data -- An overview of the analysis of next generation sequencing data -- How to analyze gene expression using RNA-sequencing data -- Analyzing ChIP-seq data: Preprocessing, normalization, differential identification, and binding pattern characterization -- Identifying differential histone modification sites from ChIP-seq data -- ChIP-seq data analysis: Identification of protein-DNA binding sites with sissrs peak-finder -- Using ChIPmotifs for de novo motif discovery of OCT4 and ZNF263 based on ChIP-based high-throughput experiments -- Hidden markov models for controlling false discovery rate in genome-wide association analysis -- Employing gene set top scoring pairs to identify deregulated pathway-signatures in dilated cardiomyopathy from integrated microarray gene expression data -- JAMIE: A software tool for jointly analyzing multiple ChIP-ChIP experiments -- Epigenetic analysis: ChIP-ChIP and ChIP-seq -- BiNGS!SL-seq: A bioinformatics pipeline for the analysis and interpretation of deep sequencing genome-wide synthetic lethal screen N2 - This book opens up new research avenues for the investigation of a wide range of biological and medical questions across the entire genome at single base resolution. It provides step-by-step detail essential for reproducible results UR - http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&doc_number=024545063&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA UR - http://www.loc.gov/catdir/enhancements/fy1306/2011943561-d.html UR - http://www.loc.gov/catdir/enhancements/fy1306/2011943561-t.html ER -